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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
211
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
RNA binding protein
1
transcription factor
Date released
86
October, 2019
84
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
234
bam
212
bigWig
196
bed narrowPeak
120
bigBed narrowPeak
118
tagAlign
40
bed broadPeak
32
bed bed3+
31
bigBed broadPeak
26
tsv
14
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
275
Homo sapiens
Biosample type
265
tissue
10
primary cell
Organ
886
pancreas
733
liver
656
connective tissue
epithelium
468
adipose tissue
382
heart
344
kidney
283
brain
230
vasculature
225
blood vessel
159
bone element
140
artery
122
limb
95
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
275
AMP
Genome assembly (visualization)
210
GRCh38
153
hg19
Lab
275
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
audit script error
month_released!
October, 2018
organ_slims!
epithelium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
275 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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