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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
34
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
232
DNA binding
40
DNA accessibility
24
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
33
control
RNA binding protein
3
transcription factor
Date released
106
October, 2019
88
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
260
bam
234
bigWig
213
bed narrowPeak
137
bigBed narrowPeak
118
tagAlign
48
bed broadPeak
39
bigBed broadPeak
37
bed bed3+
26
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hic
1
tagAlign bed3+
1
tar
Organism
304
Homo sapiens
Biosample type
265
tissue
39
primary cell
Organ
886
pancreas
733
liver
656
connective tissue
509
epithelium
468
adipose tissue
382
heart
344
kidney
283
brain
230
vasculature
225
blood vessel
159
bone element
140
artery
122
limb
95
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
304
AMP
Genome assembly (visualization)
226
GRCh38
177
hg19
Lab
304
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
audit script error
Audit category:
4
missing controlled_by
audit.ERROR.category!
audit script error
month_released!
October, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
304 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
+ See 3 more…
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