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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
68
total RNA-seq
33
DNase-seq
19
ChIP-seq
13
ATAC-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
71
Transcription
46
DNA accessibility
19
DNA binding
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
150
February, 2021
39
June, 2019
14
August, 2017
10
July, 2019
8
February, 2023
5
March, 2020
3
May, 2019
2
February, 2020
1
January, 2018
1
May, 2021
1
May, 2022
Available data
115
bam
110
bigWig
88
txt
67
tsv
52
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
7
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
234
Homo sapiens
Biosample type
223
tissue
11
primary cell
Organ
850
pancreas
745
liver
636
connective tissue
470
adipose tissue
453
epithelium
331
heart
305
kidney
167
vasculature
161
blood vessel
159
bone element
133
brain
115
artery
75
musculature of body
69
blood
69
bodily fluid
49
limb
40
eye
33
embryo
21
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
233
AMP
1
T1D
Genome assembly (visualization)
126
hg19
111
GRCh38
Lab
233
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
234 results
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RNA microarray
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
tissue
bone element
84
bone tissue
58
skeletal muscle tissue
1
10
1
4
1
1
muscle of arm
17
muscle of leg
13
3
1
+ See 17 more…
primary cell
skeletal muscle satellite cell
1
4
1
skeletal muscle cell
1
2
1
megakaryocyte
1
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