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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
202
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
133
histone modification
132
histone
77
broad histone mark
54
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
651
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
253
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
95
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
8
January, 2018
8
January, 2021
6
December, 2019
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
223
Homo sapiens
Biosample type
137
tissue
68
in vitro differentiated cells
18
primary cell
Organ
pancreas
125
connective tissue
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
223
AMP
Genome assembly (visualization)
117
hg19
97
GRCh38
Lab
223
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
organ_slims!
nerve
pancreas
BIOSAMPLE
ASSAY
223 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
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