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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ATAC-seq
41
WGBS
39
total RNA-seq
33
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
72
Transcription
51
DNA accessibility
41
DNA methylation
Date released
80
May, 2022
61
September, 2018
52
February, 2023
34
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
March, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
80
zippedFastqFolder
70
fastq
35
tsv
33
bam
33
bigWig
12
bed narrowPeak
Organism
164
Homo sapiens
Biosample type
150
primary cell
14
tissue
1
cell line
Organ
317
pancreas
165
epithelium
40
liver
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
16
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
musculature of body
Project
117
HPAP
48
AMP
Genome assembly (visualization)
45
hg19
33
GRCh38
Lab
117
Klaus Kaestner, Upenn
48
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
165 results
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Clear Filters
ATAC-seq
WGBS
total RNA-seq
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
22
25
27
7
pancreatic beta cell
13
16
10
9
pancreatic acinar cell
4
5
pancreatic delta cell
4
pancreatic ductal cell
3
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tissue
pigmented layer of retina
12
2
cell line
EndoC_BH1
1
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