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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
34
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA binding
6
DNA methylation
Target of assay
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
10
July, 2019
7
August, 2017
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2019
1
May, 2022
Available data
43
bam
41
bigWig
33
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
Organism
62
Homo sapiens
Biosample type
56
tissue
6
primary cell
Organ
791
pancreas
689
liver
606
connective tissue
459
adipose tissue
426
epithelium
317
kidney
296
heart
164
vasculature
159
blood vessel
159
bone element
121
artery
brain
73
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
6
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
45
hg19
40
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
organ_slims!
brain
target.investigated_as!
histone
BIOSAMPLE
ASSAY
62 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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