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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
Assay category
17
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
20
October, 2019
2
March, 2020
1
May, 2021
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
bedpe bed3+
1
hic
1
tar
1
tsv
Organism
23
Homo sapiens
Biosample type
21
primary cell
2
tissue
Organ
923
pancreas
644
connective tissue
510
epithelium
474
adipose tissue
453
liver
376
heart
337
kidney
283
brain
226
vasculature
221
blood vessel
159
bone element
136
artery
122
limb
95
musculature of body
60
eye
43
nerve
34
embryo
21
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
1
T1D
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
audit script error
audit.ERROR.category!
audit script error
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
DNase-seq
pCHi-C
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
tissue
thymus
2
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