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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
RRBS
17
WGBS
1
Hi-C
Assay category
34
DNA methylation
1
3D chromatin structure
Date released
21
July, 2019
7
November, 2018
6
August, 2017
1
March, 2019
Available data
3080
bam
2877
bigWig
1680
bed narrowPeak
1424
tsv
1246
fastq
976
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
7
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
35
Homo sapiens
Biosample type
26
tissue
8
primary cell
1
cell line
Organ
7
heart
7
pancreas
5
epithelium
4
musculature of body
3
kidney
3
liver
2
adipose tissue
2
brain
2
connective tissue
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
35
AMP
Genome assembly (visualization)
18
hg19
17
GRCh38
Lab
34
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent control
inconsistent ontology term
month_released!
September, 2018
BIOSAMPLE
ASSAY
35 results
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Clear Filters
RRBS
WGBS
Hi-C
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 3 more…
cell line
HepG2
1
See all biosamples
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