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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
4
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
169
DNA binding
89
Transcription
9
DNA accessibility
9
DNA methylation
Target of assay
120
histone modification
119
histone
66
broad histone mark
53
narrow histone mark
36
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
397
May, 2021
385
November, 2017
341
May, 2020
314
August, 2021
310
October, 2019
276
August, 2017
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
90
July, 2019
82
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
56
December, 2017
52
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
34
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
205
fastq
201
bam
197
bigWig
89
tsv
86
bed narrowPeak
63
tagAlign
39
bed broadPeak
33
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
269
Homo sapiens
Biosample type
222
tissue
54
primary cell
Organ
180
pancreas
connective tissue
57
adipose tissue
53
liver
26
musculature of body
25
epithelium
Project
276
AMP
Genome assembly (visualization)
202
hg19
174
GRCh38
Lab
276
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent control
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
276 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
47
1
3
skeletal muscle tissue
22
4
pancreas
10
right lobe of liver
1
1
primary cell
skeletal muscle myoblast
14
1
2
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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