Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
100
total RNA-seq
88
ChIP-seq
47
snATAC-seq
41
WGBS
39
ATAC-seq
17
pCHi-C
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
211
Transcription
88
DNA binding
86
DNA accessibility
41
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
134
May, 2022
47
September, 2023
45
May, 2020
February, 2023
19
April, 2020
18
September, 2020
16
January, 2021
7
March, 2020
5
March, 2023
3
October, 2022
Available data
196
bigWig
186
bam
153
zippedFastqFolder
104
tsv
fastq
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
442
Homo sapiens
Biosample type
360
primary cell
79
tissue
6
cell line
2
stem cell
Organ
99
pancreas
87
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
221
T1D
155
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
189
hg19
187
GRCh38
Lab
213
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
audit.ERROR.category!
inconsistent control
award.project!
AMP
files.file_type!
fastq
month_released!
February, 2023
organ_slims!
large intestine
BIOSAMPLE
ASSAY
447 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
ATAC-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
51
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
peripheral blood mononuclear cell
8
+ See 36 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
2
2
4
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download