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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
Assay category
93
DNA binding
Target of assay
668
histone modification
667
histone
427
transcription factor
344
narrow histone mark
323
broad histone mark
271
control
93
RNA binding protein
89
recombinant protein
29
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
6
January, 2019
5
May, 2024
4
April, 2019
4
May, 2019
2
August, 2017
2
December, 2017
2
December, 2018
1
August, 2021
1
November, 2019
Available data
90
bigWig
89
bed narrowPeak
87
bam
81
bigBed narrowPeak
78
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
93
Homo sapiens
Biosample type
65
cell line
28
tissue
in vitro differentiated cells
primary cell
Organ
56
liver
10
blood
10
bodily fluid
10
heart
9
pancreas
5
adipose tissue
5
connective tissue
3
blood vessel
3
vasculature
1
artery
1
epithelium
1
kidney
Project
93
AMP
Genome assembly (visualization)
85
GRCh38
84
hg19
Lab
87
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
audit.ERROR.category!
inconsistent control
biosample_type!
in vitro differentiated cells
primary cell
month_released!
January, 2018
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
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