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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
Assay category
101
DNA binding
Target of assay
726
histone modification
725
histone
469
transcription factor
381
narrow histone mark
343
broad histone mark
290
control
101
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
5
May, 2024
4
April, 2019
4
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
93
bigWig
92
bed narrowPeak
90
bam
84
fastq
80
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
101
Homo sapiens
Biosample type
65
cell line
25
tissue
11
in vitro differentiated cells
primary cell
Organ
58
liver
10
blood
10
bodily fluid
10
heart
9
connective tissue
9
pancreas
5
adipose tissue
3
blood vessel
3
epithelium
vasculature
1
artery
1
kidney
Project
101
AMP
Genome assembly (visualization)
88
GRCh38
87
hg19
Lab
90
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
audit.ERROR.category!
inconsistent control
biosample_type!
primary cell
month_released!
January, 2018
organ_slims!
vasculature
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
+ See 6 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
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