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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ChIP-seq
Assay category
427
DNA binding
Target of assay
666
histone modification
665
histone
427
transcription factor
343
narrow histone mark
322
broad histone mark
270
control
93
RNA binding protein
89
recombinant protein
29
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
241
November, 2017
64
November, 2018
27
December, 2018
23
August, 2017
15
October, 2018
14
January, 2019
11
August, 2021
7
October, 2019
6
April, 2019
5
February, 2021
5
May, 2024
4
December, 2017
4
May, 2019
1
November, 2019
Available data
421
bigWig
410
bam
399
bed narrowPeak
388
fastq
365
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
13
bed bed3+
5
tagAlign
3
tar
Organism
427
Homo sapiens
Biosample type
360
cell line
67
tissue
49
in vitro differentiated cells
10
primary cell
Organ
309
liver
50
blood
50
bodily fluid
18
pancreas
17
adipose tissue
17
connective tissue
16
heart
8
kidney
7
blood vessel
7
vasculature
6
spleen
5
artery
1
epithelium
Project
427
AMP
Genome assembly (visualization)
412
hg19
374
GRCh38
Lab
411
AMP-T2D consortium
11
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
Audit category:
inconsistent control
8
inconsistent ontology term
Audit category:
30
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent control
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
427 results
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Clear Filters
ChIP-seq
cell line
HepG2
297
GM12878
50
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
+ See 3 more…
tissue
white adipose tissue
12
liver
10
body of pancreas
9
islet of Langerhans
7
spleen
6
+ See 11 more…
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