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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
70
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
397
DNA binding
70
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
354
transcription factor
88
recombinant protein
62
RNA binding protein
29
chromatin remodeller
25
histone
25
histone modification
13
control
13
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
268
November, 2017
57
February, 2021
57
November, 2018
26
December, 2018
22
August, 2021
20
January, 2019
18
October, 2019
2
March, 2020
1
January, 2018
Available data
530
bam
471
bigWig
426
fastq
388
bed narrowPeak
353
bigBed narrowPeak
84
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
471
Homo sapiens
Biosample type
1745
tissue
471
cell line
382
primary cell
239
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
54
blood
54
bodily fluid
epithelium
12
kidney
8
embryo
Project
471
AMP
Genome assembly (visualization)
466
hg19
405
GRCh38
Lab
457
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
audit.ERROR.category!
inconsistent control
organ_slims!
epithelium
BIOSAMPLE
ASSAY
471 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
53
1
H1-hESC
8
Panc1
6
1
1
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