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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
Assay category
10
3D chromatin structure
Date released
3
March, 2020
3
October, 2019
3
October, 2022
1
March, 2023
Available data
869
bam
844
bigWig
550
fastq
405
bed narrowPeak
395
tsv
153
zippedFastqFolder
140
tagAlign
110
bigBed narrowPeak
52
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
11
bedpe bed3+
10
hic
7
bed bedMethyl
7
bed bedgraph
7
bigBed bedMethyl
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
10
Homo sapiens
Biosample type
10
tissue
6
primary cell
4
in vitro differentiated cells
2
cell line
Organ
5
epithelium
3
pancreas
2
blood vessel
2
vasculature
2
vein
Project
6
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
4
inconsistent ontology term
audit.ERROR.category!
inconsistent control
organ_slims!
kidney
BIOSAMPLE
ASSAY
10 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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