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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
800
ChIP-seq
302
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1365
Transcription
800
DNA binding
513
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
528
histone modification
527
histone
269
broad histone mark
257
narrow histone mark
162
control
112
transcription factor
39
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
279
August, 2017
251
August, 2021
201
October, 2019
166
May, 2021
163
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
111
February, 2023
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
64
December, 2017
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
19
April, 2020
16
November, 2017
15
May, 2023
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2171
bam
2004
bigWig
1207
tsv
1089
bed narrowPeak
551
bigBed narrowPeak
491
fastq
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2864
Homo sapiens
Biosample type
2512
tissue
988
primary cell
641
cell line
354
in vitro differentiated cells
10
stem cell
Organ
622
connective tissue
489
pancreas
481
adipose tissue
314
heart
299
kidney
279
liver
158
bone element
147
brain
133
blood vessel
133
vasculature
122
limb
73
artery
67
musculature of body
56
eye
43
nerve
36
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2769
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1963
GRCh38
1903
hg19
4
hg18
Lab
2460
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
203
inconsistent ontology term
inconsistent control
11
audit script error
Audit category:
28
missing controlled_by
Audit category:
23
inconsistent control read length
audit.ERROR.category!
inconsistent control
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
2866 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
62
68
6
1
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
48
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 149 more…
in vitro differentiated cells
adipocyte
5
53
8
1
1
cardiomyocytes
59
embryonic stem cell
7
40
6
1
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
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