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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
52
ChIP-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
52
DNA binding
21
DNA accessibility
4
3D chromatin structure
Target of assay
29
control
22
histone
22
histone modification
12
transcription factor
11
broad histone mark
narrow histone mark
5
RNA binding protein
Date released
117
May, 2021
26
February, 2021
23
February, 2018
August, 2017
17
August, 2021
14
February, 2023
8
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
208
bam
183
bigWig
131
tsv
66
fastq
bed narrowPeak
18
tagAlign
14
bed bed3+
11
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
226
Homo sapiens
Biosample type
1543
tissue
764
primary cell
257
cell line
226
in vitro differentiated cells
8
stem cell
Organ
27
connective tissue
14
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
226
AMP
Genome assembly (visualization)
160
hg19
131
GRCh38
4
hg18
Lab
186
AMP-T2D consortium
37
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
audit.ERROR.category!
inconsistent control
files.file_type!
bed narrowPeak
month_released!
August, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
226 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
28
5
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
adipocyte
5
7
1
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