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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
134
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
139
DNA binding
136
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
72
histone
72
histone modification
43
transcription factor
36
narrow histone mark
35
broad histone mark
24
control
9
RNA binding protein
2
chromatin remodeller
Date released
124
May, 2021
54
August, 2017
39
February, 2018
26
February, 2021
24
December, 2017
18
August, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
267
bam
234
bigWig
129
tsv
122
fastq
110
bed narrowPeak
tagAlign
23
bed bed3+
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
326
Homo sapiens
Biosample type
2497
tissue
586
primary cell
562
cell line
326
in vitro differentiated cells
10
stem cell
Organ
79
connective tissue
29
embryo
epithelium
15
liver
1
adipose tissue
1
heart
Project
326
AMP
Genome assembly (visualization)
255
hg19
229
GRCh38
4
hg18
Lab
279
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent control
files.file_type!
tagAlign
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
epithelium
BIOSAMPLE
ASSAY
326 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
5
7
1
cardiomyocytes
59
embryonic stem cell
40
7
5
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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