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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
ChIP-seq
17
pCHi-C
7
RRBS
6
Hi-C
1
DNAme array
Assay category
182
Transcription
178
DNA accessibility
55
DNA methylation
29
DNA binding
6
3D chromatin structure
Target of assay
22
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
35
May, 2021
13
August, 2017
8
January, 2021
8
October, 2019
7
June, 2019
6
July, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
578
bam
409
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
467
Homo sapiens
Biosample type
797
tissue
467
primary cell
135
in vitro differentiated cells
133
cell line
7
stem cell
Organ
175
epithelium
154
pancreas
8
blood
8
bodily fluid
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
314
HPAP
128
AMP
24
T1D
1
ITG
Genome assembly (visualization)
29
hg19
17
GRCh38
Lab
314
Klaus Kaestner, Upenn
128
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
13
inconsistent ontology term
audit.ERROR.category!
inconsistent control
files.file_type!
bigBed broadPeak
bigWig
organ_slims!
kidney
BIOSAMPLE
ASSAY
467 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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