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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
18
DNase-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
24
DNA binding
18
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
14
August, 2017
14
June, 2019
6
November, 2017
4
July, 2019
4
October, 2019
3
August, 2021
2
May, 2021
1
February, 2021
1
November, 2020
Available data
585
bigWig
578
bam
409
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
49
Homo sapiens
Biosample type
174
tissue
61
cell line
49
primary cell
26
in vitro differentiated cells
3
stem cell
Organ
27
epithelium
14
brain
14
vasculature
10
blood vessel
kidney
8
connective tissue
6
liver
4
vein
3
heart
1
eye
1
musculature of body
Project
49
AMP
Genome assembly (visualization)
48
hg19
38
GRCh38
Lab
47
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent control
organ_slims!
kidney
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
endothelial cell of umbilical vein
2
2
hepatocyte
3
1
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