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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
36
ATAC-seq
27
DNase-seq
1
FAIRE-seq
Assay category
198
DNA binding
64
DNA accessibility
Target of assay
190
histone
190
histone modification
100
broad histone mark
90
narrow histone mark
8
RNA binding protein
8
transcription factor
Date released
127
May, 2021
47
June, 2019
46
September, 2018
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
564
bigWig
548
bam
348
fastq
267
tsv
262
bed narrowPeak
153
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
262
Homo sapiens
Biosample type
891
tissue
403
cell line
262
primary cell
89
in vitro differentiated cells
2
stem cell
Organ
89
epithelium
51
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
178
AMP
84
T1D
Genome assembly (visualization)
255
hg19
231
GRCh38
Lab
148
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
audit.ERROR.category!
inconsistent control
month_released!
August, 2017
June, 2018
BIOSAMPLE
ASSAY
262 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
8
4
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