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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
3
DNA accessibility
2
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
3
histone
3
histone modification
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
2
August, 2021
2
July, 2019
2
June, 2019
1
October, 2019
Available data
10
bam
9
bigWig
5
tsv
4
bed bed3+
4
bed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
12
Homo sapiens
Biosample type
392
cell line
290
tissue
12
primary cell
10
in vitro differentiated cells
Organ
371
epithelium
315
pancreas
35
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
12
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
12
AMP
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
inconsistent control
month_released!
January, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
12 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
2
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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