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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
27
snATAC-seq
27
total RNA-seq
15
ATAC-seq
13
single cell RNA-seq
6
WGBS
1
pCHi-C
Assay category
42
DNA accessibility
40
Transcription
32
DNA binding
6
DNA methylation
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
42
June, 2019
24
July, 2019
23
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
118
fastq
75
bam
74
bigWig
47
bed narrowPeak
33
tsv
14
bigBed narrowPeak
1
bed bed3
1
bed bed3+
1
csv
Organism
121
Homo sapiens
Biosample type
537
tissue
121
primary cell
96
cell line
26
in vitro differentiated cells
Organ
78
pancreas
67
epithelium
3
connective tissue
Project
76
AMP
45
HPAP
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
76
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
27
audit script error
Audit category:
32
missing controlled_by
audit.ERROR.category!
inconsistent control
organ_slims!
kidney
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic ductal cell
13
4
4
pancreatic alpha cell
10
3
6
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
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