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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
pCHi-C
9
total RNA-seq
7
Hi-C
2
ATAC-seq
2
ChIP-seq
Assay category
9
Transcription
7
3D chromatin structure
2
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
47
September, 2023
44
March, 2020
42
May, 2022
40
May, 2024
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
24
December, 2017
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
32
tsv
11
bigWig
9
bam
7
bedpe bed3+
7
hic
2
bed narrowPeak
Organism
44
Homo sapiens
Biosample type
40
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
9
pancreas
7
heart
5
musculature of body
3
blood vessel
3
liver
3
vasculature
2
brain
2
connective tissue
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
40
AMP
4
T1D
Genome assembly (visualization)
18
hg19
9
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
audit.ERROR.category!
inconsistent control
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
44 results
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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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