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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
187
ATAC-seq
174
single cell RNA-seq
123
total RNA-seq
87
RNA microarray
24
pCHi-C
18
snATAC-seq
14
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
297
Transcription
292
DNA binding
206
DNA accessibility
22
DNA methylation
14
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
227
August, 2021
106
August, 2017
101
February, 2021
82
October, 2019
77
February, 2023
47
September, 2023
29
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
22
May, 2022
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
October, 2017
6
September, 2017
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
March, 2019
3
November, 2018
1
August, 2022
1
January, 2019
Available data
1856
bam
bigWig
1075
tsv
939
bed narrowPeak
534
bigBed narrowPeak
326
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
946
Homo sapiens
Biosample type
949
tissue
451
primary cell
115
cell line
93
in vitro differentiated cells
7
stem cell
Organ
208
kidney
156
heart
100
bone element
96
liver
77
pancreas
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
881
AMP
47
KPMP
19
LungMap
2
T1D
Genome assembly (visualization)
146
GRCh38
88
hg19
Lab
714
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
audit.ERROR.category!
inconsistent control
files.file_type!
bigWig
lab.title!
Bing Ren, UCSD
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
949 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
35
20
4
1
1
1
4
liver
63
1
20
1
1
1
3
bone element
84
coronary artery
2
35
1
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