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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
1
DNase-seq
Assay category
193
DNA binding
103
Transcription
32
DNA accessibility
13
DNA methylation
Target of assay
74
histone modification
73
histone
67
control
52
transcription factor
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
Date released
175
August, 2017
58
October, 2018
24
May, 2022
21
December, 2017
17
November, 2018
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1814
bam
1687
bigWig
1018
tsv
949
bed narrowPeak
534
bigBed narrowPeak
350
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
334
Homo sapiens
Biosample type
389
primary cell
368
cell line
341
tissue
140
in vitro differentiated cells
4
stem cell
Organ
211
pancreas
53
liver
42
adipose tissue
42
connective tissue
23
spleen
10
brain
2
musculature of body
Project
341
AMP
Genome assembly (visualization)
258
hg19
244
GRCh38
Lab
315
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent control
files.file_type!
bigBed broadPeak
organ_slims!
bone element
BIOSAMPLE
ASSAY
341 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
28
97
20
6
1
1
liver
40
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
16
2
1
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