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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
873
ChIP-seq
248
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1165
Transcription
873
DNA binding
458
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
183
control
64
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
395
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
21
December, 2017
19
April, 2020
15
May, 2023
8
January, 2021
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1807
bam
1684
bigWig
1017
tsv
946
bed narrowPeak
531
bigBed narrowPeak
343
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2575
Homo sapiens
Biosample type
2584
tissue
1087
primary cell
634
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
334
liver
313
heart
299
kidney
265
brain
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2487
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1763
GRCh38
1655
hg19
Lab
2232
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent control
9
audit script error
7
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent control
month_released!
December, 2018
organ_slims!
bone element
large intestine
BIOSAMPLE
ASSAY
2584 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
118
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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