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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
Assay category
94
DNA binding
10
DNA accessibility
5
Transcription
Target of assay
50
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
9
chromatin remodeller
9
narrow histone mark
Date released
40
October, 2019
26
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
101
bam
85
bigWig
80
bed narrowPeak
79
bigBed narrowPeak
59
fastq
5
tsv
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
109
Homo sapiens
Biosample type
60
cell line
41
tissue
8
primary cell
Organ
916
pancreas
751
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
68
blood
68
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
8
T1D
Genome assembly (visualization)
83
hg19
82
GRCh38
Lab
101
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
inconsistent control
audit.ERROR.category!
inconsistent control
files.file_type!
bed bed3+
month_released!
August, 2022
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
cell line
GM12878
59
1
tissue
tibial nerve
35
5
1
primary cell
peripheral blood mononuclear cell
8
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