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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
17
small RNA-seq
12
WGBS
11
RRBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
Assay category
59
Transcription
23
DNA methylation
7
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
705
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
276
October, 2019
201
February, 2023
199
May, 2022
184
August, 2021
168
July, 2018
115
May, 2019
93
July, 2019
79
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
52
December, 2017
49
April, 2018
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
28
June, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
November, 2020
9
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
78
bigWig
75
bam
59
tsv
19
bed bedMethyl
19
bigBed bedMethyl
6
bed narrowPeak
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
93
Homo sapiens
Biosample type
73
tissue
20
primary cell
Organ
25
heart
17
connective tissue
15
brain
12
adipose tissue
11
epithelium
kidney
10
musculature of body
10
vasculature
9
blood vessel
9
liver
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
93
AMP
Genome assembly (visualization)
76
hg19
73
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
inconsistent control
files.file_type!
bed bed3+
organ_slims!
kidney
BIOSAMPLE
ASSAY
93 results
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Clear Filters
total RNA-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
cardiac atrium fibroblast
1
+ See 12 more…
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