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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
32
DNase-seq
22
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
247
DNA binding
37
DNA accessibility
29
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
209
histone
209
histone modification
123
narrow histone mark
86
broad histone mark
40
control
1
RNA binding protein
1
transcription factor
Date released
128
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
Available data
277
bam
244
bigWig
224
bed narrowPeak
147
bigBed narrowPeak
118
tagAlign
43
bed broadPeak
34
bed bed3+
34
bigBed broadPeak
31
tsv
15
fastq
2
hdf5
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
318
Homo sapiens
Biosample type
307
tissue
11
primary cell
Organ
946
pancreas
763
liver
678
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
285
brain
vasculature
230
blood vessel
155
bone element
141
artery
122
limb
96
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
318
AMP
Genome assembly (visualization)
242
GRCh38
184
hg19
Lab
318
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent control
files.file_type!
bed bed3
organ_slims!
vasculature
BIOSAMPLE
ASSAY
318 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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