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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
31
ChIP-seq
7
ATAC-seq
4
Hi-C
1
WGBS
Assay category
41
DNA accessibility
31
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
25
histone
25
histone modification
18
broad histone mark
7
narrow histone mark
6
control
Date released
32
June, 2019
27
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
Available data
72
bam
65
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
77
Homo sapiens
Biosample type
77
tissue
Organ
590
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
202
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
68
blood
68
bodily fluid
56
eye
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
77
AMP
Genome assembly (visualization)
65
GRCh38
65
hg19
Lab
77
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
inconsistent control
files.file_type!
bed bedgraph
tsv
organ_slims!
nerve
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial artery
2
23
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
distal epiphysis of femur
1
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