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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
12
ATAC-seq
4
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
17
DNA binding
15
DNA accessibility
4
Transcription
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
8
February, 2021
8
February, 2023
1
March, 2020
Available data
28
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
38
Homo sapiens
Biosample type
22
primary cell
16
tissue
Organ
590
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
202
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
68
blood
68
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
38
AMP
Genome assembly (visualization)
29
hg19
20
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
audit.ERROR.category!
inconsistent control
files.file_type!
bed bedgraph
tsv
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
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