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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
ChIP-seq
194
total RNA-seq
24
ATAC-seq
8
DNase-seq
4
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
560
DNA binding
198
Transcription
32
DNA accessibility
4
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
311
transcription factor
127
histone modification
126
histone
119
control
82
recombinant protein
68
narrow histone mark
58
RNA binding protein
58
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
53
August, 2017
52
November, 2018
49
October, 2019
40
May, 2022
36
December, 2017
34
August, 2021
9
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
February, 2020
2
June, 2019
2
March, 2020
1
December, 2018
Available data
696
bam
626
bigWig
441
bed narrowPeak
438
fastq
357
bigBed narrowPeak
179
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
802
Homo sapiens
Biosample type
399
cell line
375
tissue
15
in vitro differentiated cells
13
primary cell
Organ
933
pancreas
759
liver
681
connective tissue
512
epithelium
489
adipose tissue
382
heart
349
kidney
284
brain
231
vasculature
226
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
68
blood
68
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
802
AMP
Genome assembly (visualization)
625
hg19
534
GRCh38
Lab
732
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent control
files.file_type!
bigBed bedMethyl
hic
BIOSAMPLE
ASSAY
802 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
1
2
1
tissue
liver
118
167
20
2
3
1
1
1
tibial nerve
35
5
1
2
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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