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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
34
ChIP-seq
2
single cell RNA-seq
Assay category
56
Transcription
44
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
24
October, 2019
5
May, 2019
July, 2019
2
August, 2021
2
February, 2020
Available data
99
bam
82
bigWig
73
bed narrowPeak
56
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
68
tissue
66
cell line
Organ
932
pancreas
691
liver
657
connective tissue
489
epithelium
477
adipose tissue
338
heart
265
kidney
230
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
68
blood
68
bodily fluid
56
eye
53
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
121
GRCh38
86
hg19
Lab
134
AMP-T2D consortium
audit.ERROR.category!
inconsistent control
files.file_type!
bigBed broadPeak
lab.title!
Maike Sander, UCSD
month_released!
July, 2019
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
35
5
tibial artery
1
1
23
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
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