Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
196
total RNA-seq
30
ATAC-seq
8
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
218
DNA binding
200
Transcription
31
DNA accessibility
8
3D chromatin structure
8
DNA methylation
Target of assay
125
control
69
histone modification
68
histone
47
narrow histone mark
24
transcription factor
21
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
48
August, 2017
40
May, 2022
34
August, 2021
30
October, 2019
15
July, 2019
13
December, 2017
9
February, 2021
5
December, 2019
5
January, 2019
4
February, 2020
3
March, 2020
2
November, 2018
1
December, 2018
1
May, 2019
Available data
768
bam
686
bigWig
506
bed narrowPeak
438
fastq
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
vcf
Organism
470
Homo sapiens
Biosample type
350
tissue
107
cell line
12
primary cell
1
in vitro differentiated cells
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
432
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
470
AMP
Genome assembly (visualization)
283
hg19
218
GRCh38
Lab
400
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent control
files.file_type!
bigBed narrowPeak
vcf
BIOSAMPLE
ASSAY
470 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
tissue
liver
107
167
20
1
3
1
1
1
1
tibial nerve
11
5
1
right lobe of liver
3
3
1
2
1
tibial artery
5
1
1
gastrocnemius medialis
1
4
+ See 8 more…
cell line
HepG2
85
14
1
2
1
2
2
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
See all biosamples
Download