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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
ChIP-seq
189
total RNA-seq
23
ATAC-seq
4
Hi-C
4
WGBS
3
DNase-seq
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
390
DNA binding
193
Transcription
26
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
262
transcription factor
80
control
66
recombinant protein
45
histone modification
44
histone
39
RNA binding protein
24
broad histone mark
20
narrow histone mark
16
chromatin remodeller
2
other context
2
other post-translational modification
Date released
303
November, 2017
144
May, 2020
November, 2018
40
May, 2022
36
December, 2017
34
August, 2017
31
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
601
bam
543
bigWig
385
fastq
363
bed narrowPeak
280
bigBed narrowPeak
174
tsv
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
625
Homo sapiens
Biosample type
343
cell line
257
tissue
15
in vitro differentiated cells
10
primary cell
Organ
920
pancreas
660
connective tissue
625
liver
517
epithelium
481
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
166
brain
159
bone element
135
artery
122
limb
80
musculature of body
61
eye
52
blood
52
bodily fluid
43
nerve
36
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
625
AMP
Genome assembly (visualization)
507
hg19
421
GRCh38
Lab
554
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
11
inconsistent control read length
4
inconsistent control run_type
audit.ERROR.category!
inconsistent control
files.file_type!
tagAlign
month_released!
January, 2018
November, 2018
BIOSAMPLE
ASSAY
625 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
DNase-seq
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
321
14
1
2
2
2
1
tissue
liver
44
167
20
1
3
1
1
1
1
right lobe of liver
10
3
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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