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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
10
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
33
DNA accessibility
10
DNA binding
6
Transcription
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
control
Date released
43
June, 2019
May, 2019
5
July, 2019
2
March, 2020
Available data
62
bigWig
54
bed narrowPeak
50
bam
46
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
50
Homo sapiens
Biosample type
37
tissue
13
primary cell
Organ
687
pancreas
654
liver
593
connective tissue
442
adipose tissue
312
epithelium
215
brain
190
heart
139
kidney
135
vasculature
130
blood vessel
107
limb
97
artery
66
bone element
59
blood
59
bodily fluid
50
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
50
AMP
Genome assembly (visualization)
48
GRCh38
47
hg19
Lab
50
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
audit.ERROR.category!
inconsistent control
lab.title!
Struan F.A. Grant, CHOP
month_released!
May, 2019
BIOSAMPLE
ASSAY
50 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
psoas muscle
2
skeletal muscle tissue
1
1
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
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