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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
1
Hi-C
Assay category
12
DNA accessibility
1
3D chromatin structure
Date released
10
February, 2023
2
February, 2021
1
March, 2019
Available data
3364
bam
3141
bigWig
1789
bed narrowPeak
1600
tsv
1330
fastq
1014
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
6
tissue
5
in vitro differentiated cells
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
1
pancreas
Project
13
AMP
Genome assembly (visualization)
13
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
audit.ERROR.category!
inconsistent control
files.file_type!
csv
BIOSAMPLE
ASSAY
13 results
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ATAC-seq
Hi-C
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
islet of Langerhans
1
+ See 1 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
primary cell
osteoblast
1
See all biosamples
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