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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
311
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
311
DNA binding
6
DNA accessibility
Target of assay
287
transcription factor
81
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
21
broad histone mark
21
chromatin remodeller
narrow histone mark
2
other context
2
other post-translational modification
Date released
243
November, 2017
51
November, 2018
16
December, 2017
5
August, 2017
2
June, 2019
Available data
604
bam
543
bigWig
419
fastq
363
bed narrowPeak
317
bigBed narrowPeak
174
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
317
Homo sapiens
Biosample type
287
cell line
19
tissue
9
in vitro differentiated cells
2
primary cell
Organ
317
liver
94
brain
94
kidney
72
heart
72
pancreas
70
limb
61
epithelium
58
vasculature
55
blood vessel
52
blood
52
bodily fluid
41
musculature of body
23
connective tissue
19
artery
18
nerve
18
ureter
11
spleen
9
adipose tissue
8
vein
5
eye
Project
317
AMP
Genome assembly (visualization)
313
hg19
285
GRCh38
Lab
317
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent control
month_released!
January, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
317 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
287
tissue
liver
10
2
right lobe of liver
5
1
1
in vitro differentiated cells
hepatocyte
9
primary cell
hepatic stellate cell
1
hepatocyte
1
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