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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
24
ChIP-seq
4
DNase-seq
2
ATAC-seq
Assay category
54
Transcription
24
DNA binding
6
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
5
transcription factor
RNA binding protein
Date released
56
February, 2021
21
October, 2019
3
July, 2019
2
June, 2019
2
May, 2019
Available data
101
bam
84
bigWig
73
bed narrowPeak
58
tsv
24
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
84
Homo sapiens
Biosample type
56
cell line
26
tissue
2
primary cell
Organ
614
pancreas
560
connective tissue
539
liver
420
adipose tissue
293
epithelium
219
brain
213
heart
150
vasculature
146
blood vessel
129
kidney
91
limb
84
artery
68
musculature of body
58
bone element
44
blood
44
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
5
eye
1
pericardium
1
pituitary gland
Project
84
AMP
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
84
AMP-T2D consortium
audit.ERROR.category!
inconsistent control
organ_slims!
large intestine
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
4
tissue
tibial artery
18
2
1
coronary artery
2
2
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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