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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1
Hi-C
1
whole genome sequencing assay
Assay category
1
3D chromatin structure
1
DNA sequencing
Date released
1
August, 2021
1
July, 2019
Available data
654
bam
595
bigWig
438
fastq
414
bed narrowPeak
331
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Organ
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
2
AMP
Genome assembly (visualization)
1
hg19
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
2 results
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Hi-C
whole genome sequencing assay
cell line
HepG2
1
primary cell
endothelial cell of hepatic sinusoid
1
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