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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
25
total RNA-seq
1
Hi-C
Assay category
100
DNA binding
25
Transcription
1
3D chromatin structure
Target of assay
42
transcription factor
31
histone
31
histone modification
25
control
16
narrow histone mark
15
broad histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
67
December, 2017
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
101
fastq
100
bam
74
bed narrowPeak
74
bigWig
52
bigBed narrowPeak
25
tsv
15
bed bed3+
Organism
126
Homo sapiens
Biosample type
53
tissue
43
in vitro differentiated cells
27
cell line
3
stem cell
Organ
38
liver
26
blood
26
bodily fluid
19
epithelium
13
embryo
12
brain
7
spleen
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
126
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
126
AMP-T2D consortium
Audit category:
inconsistent control
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
audit.ERROR.category!
inconsistent control
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
tissue
liver
11
right lobe of liver
10
1
spleen
7
Ammon's horn
1
C1 segment of cervical spinal cord
1
+ See 22 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
GM12878
26
HepG2
1
stem cell
hESC
3
See all biosamples
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