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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
51
ChIP-seq
45
ATAC-seq
6
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
56
Transcription
52
DNA accessibility
51
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
11
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
47
October, 2019
35
February, 2023
5
May, 2019
3
July, 2019
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
122
bam
100
bigWig
87
bed narrowPeak
56
tsv
38
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
161
Homo sapiens
Biosample type
71
tissue
66
cell line
24
primary cell
Organ
838
pancreas
689
liver
679
connective tissue
490
adipose tissue
438
epithelium
301
heart
286
brain
230
vasculature
224
blood vessel
224
kidney
159
bone element
139
artery
122
limb
94
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
140
GRCh38
110
hg19
Lab
161
AMP-T2D consortium
Audit category:
1
audit script error
audit.ERROR.category!
inconsistent control
month_released!
August, 2021
May, 2022
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
coronary artery
1
5
36
2
tibial artery
1
23
1
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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