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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
31
DNase-seq
4
small RNA-seq
4
total RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
131
DNA binding
35
DNA accessibility
11
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
109
histone
109
histone modification
67
broad histone mark
42
narrow histone mark
23
control
2
RNA binding protein
2
transcription factor
Date released
88
November, 2017
October, 2019
29
June, 2019
28
May, 2019
17
July, 2019
16
October, 2017
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
156
bam
141
bigWig
125
bed narrowPeak
124
bigBed narrowPeak
80
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
18
fastq
13
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
183
Homo sapiens
Biosample type
167
tissue
16
primary cell
Organ
927
pancreas
756
liver
678
connective tissue
489
epithelium
488
adipose tissue
382
heart
324
kidney
188
brain
186
vasculature
blood vessel
159
bone element
113
artery
94
musculature of body
68
blood
68
bodily fluid
50
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
183
AMP
Genome assembly (visualization)
136
GRCh38
81
hg19
Lab
183
AMP-T2D consortium
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent control
month_released!
February, 2020
October, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
183 results
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ChIP-seq
DNase-seq
small RNA-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
15
14
1
1
layer of hippocampus
22
temporal lobe
15
1
1
caudate nucleus
15
1
substantia nigra
15
+ See 18 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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