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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
5
total RNA-seq
4
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
39
DNA binding
6
DNA accessibility
5
Transcription
2
3D chromatin structure
Target of assay
39
histone
39
histone modification
25
broad histone mark
14
narrow histone mark
control
Date released
50
October, 2019
1
February, 2020
1
March, 2020
Available data
49
bam
46
bigWig
40
bed narrowPeak
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tsv
4
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
52
Homo sapiens
Biosample type
32
tissue
20
primary cell
Organ
861
pancreas
653
liver
462
epithelium
334
kidney
309
heart
255
brain
194
connective tissue
150
vasculature
145
blood vessel
99
limb
90
musculature of body
81
adipose tissue
68
artery
62
blood
62
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
48
hg19
43
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
audit.ERROR.category!
inconsistent control
month_released!
February, 2021
target.investigated_as!
control
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
tibial nerve
24
5
2
1
primary cell
endothelial cell of umbilical vein
15
2
2
1
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