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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
pCHi-C
Assay category
48
DNA binding
9
DNA accessibility
Target of assay
38
transcription factor
8
RNA binding protein
7
chromatin remodeller
5
histone
5
histone modification
5
narrow histone mark
3
control
Date released
26
December, 2018
18
January, 2019
November, 2018
8
January, 2021
4
October, 2019
1
January, 2018
1
March, 2020
Available data
44
bam
44
fastq
42
bigWig
41
bed narrowPeak
41
bigBed narrowPeak
1
tsv
Organism
58
Homo sapiens
Biosample type
45
cell line
8
primary cell
5
tissue
Organ
939
pancreas
711
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
53
blood
53
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
8
T1D
Genome assembly (visualization)
42
hg19
41
GRCh38
Lab
50
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
inconsistent control
audit.ERROR.category!
inconsistent control
month_released!
November, 2018
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
cell line
GM12878
44
1
primary cell
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
4
ovary
1
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