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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
89
total RNA-seq
9
WGBS
5
DNase-seq
2
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
248
DNA binding
89
Transcription
11
DNA methylation
8
DNA accessibility
Target of assay
166
histone modification
165
histone
91
broad histone mark
73
narrow histone mark
47
transcription factor
35
control
8
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
373
May, 2021
356
August, 2017
341
May, 2020
334
November, 2017
313
August, 2021
272
October, 2019
155
June, 2019
153
February, 2023
135
July, 2018
118
May, 2022
108
May, 2019
85
July, 2019
80
April, 2019
74
October, 2018
72
November, 2018
53
March, 2020
48
December, 2017
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
34
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
7
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
256
fastq
253
bam
242
bigWig
112
bed narrowPeak
89
tsv
70
tagAlign
39
bigBed narrowPeak
33
bed bed3+
28
bed broadPeak
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
349
Homo sapiens
Biosample type
258
tissue
68
in vitro differentiated cells
30
primary cell
Organ
188
pancreas
125
connective tissue
57
adipose tissue
54
liver
epithelium
musculature of body
Project
356
AMP
Genome assembly (visualization)
244
hg19
232
GRCh38
Lab
356
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent control
organ_slims!
epithelium
musculature of body
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
356 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
DNase-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
pancreas
14
white adipose tissue
12
+ See 3 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
See all biosamples
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