Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
60
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
9
ATAC-seq
8
Hi-C
2
FAIRE-seq
Assay category
406
DNA binding
121
Transcription
27
DNA methylation
11
DNA accessibility
8
3D chromatin structure
Target of assay
244
transcription factor
88
histone
88
histone modification
74
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
67
December, 2017
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
474
bam
422
bigWig
365
fastq
320
bed narrowPeak
314
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
65
tsv
64
bigBed broadPeak
23
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
4
bed bed3+
4
hdf5
3
tar
Organism
573
Homo sapiens
Biosample type
315
cell line
159
tissue
99
primary cell
Organ
325
liver
109
brain
38
epithelium
25
heart
25
pancreas
18
connective tissue
18
vasculature
14
blood vessel
12
adipose tissue
11
kidney
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
514
AMP
59
HPAP
Genome assembly (visualization)
372
hg19
362
GRCh38
Lab
514
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
audit.ERROR.category!
inconsistent control
month_released!
July, 2018
BIOSAMPLE
ASSAY
573 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 31 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
+ See 23 more…
See all biosamples
Download