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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
84
RNA microarray
69
total RNA-seq
36
DNase-seq
15
ATAC-seq
8
snATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
125
DNA binding
69
Transcription
59
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
50
histone
50
histone modification
50
transcription factor
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
9
chromatin remodeller
Date released
150
February, 2021
69
October, 2019
32
June, 2019
26
December, 2018
18
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
7
May, 2019
5
July, 2019
3
February, 2020
1
January, 2018
1
May, 2021
Available data
233
bam
203
bigWig
147
bed narrowPeak
137
bigBed narrowPeak
88
txt
65
tsv
59
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
343
Homo sapiens
Biosample type
274
tissue
60
cell line
9
primary cell
Organ
946
pancreas
764
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
334
AMP
9
T1D
Genome assembly (visualization)
214
hg19
209
GRCh38
Lab
334
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
inconsistent control
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
343 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
+ See 17 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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