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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
34
DNase-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
156
DNA binding
40
DNA accessibility
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
95
October, 2019
49
November, 2017
30
June, 2019
18
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
3
March, 2020
2
November, 2018
1
February, 2023
Available data
193
bam
170
bigWig
150
bed narrowPeak
77
bigBed narrowPeak
73
tagAlign
45
bed broadPeak
40
bigBed broadPeak
37
bed bed3+
26
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
229
Homo sapiens
Biosample type
195
tissue
34
primary cell
Organ
868
pancreas
722
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
68
blood
68
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
229
AMP
Genome assembly (visualization)
163
GRCh38
149
hg19
Lab
229
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
audit.ERROR.category!
inconsistent control
organ_slims!
intestine
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
7
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
primary cell
endothelial cell of umbilical vein
8
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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